Target folder: C:/Git/ETN_workshop_Jan2021/actel_example
Timestamp: 2021-01-25 15:38:14
Number of target tags: 60
Number of listed receivers: 17 (of which 1 had no detections)
Data time range: 2018-04-13 22:26:37 to 2018-05-25 17:46:13 (Europe/Copenhagen).
Percentage of post-release valid detections: 100%
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Arrays with the same background belong to the same section. Release sites are marked with “R.S.”. Arrays connected with an arrow indicate that the animals can only pass in one direction.
| Station.name | Latitude | Longitude | x | y | Array | Section | Standard.name |
|---|---|---|---|---|---|---|---|
| Station -1 | 56.35474 | 8.629019 | 477075.2 | 6245625 | A0 | River | St.1 |
| Station 1 | 56.35672 | 8.603097 | 475474.6 | 6245854 | A1 | River | St.2 |
| Station 2 | 56.36505 | 8.510094 | 469734.4 | 6246818 | A2 | River | St.3 |
| Station 3 | 56.34976 | 8.385683 | 462033.4 | 6245178 | A3 | River | St.4 |
| Station 4 | 56.32894 | 8.309133 | 457279.2 | 6242906 | A4 | River | St.5 |
| Station 5 | 56.32576 | 8.306444 | 457109.4 | 6242553 | A5 | River | St.6 |
| Station 6 | 56.32267 | 8.303267 | 456909.4 | 6242211 | A6 | River | St.7 |
| Station 7 | 56.32865 | 8.249125 | 453568.3 | 6242912 | A7 | Fjord | St.8 |
| Station 8 | 56.32610 | 8.246447 | 453399.6 | 6242630 | A7 | Fjord | St.9 |
| Station 9 | 56.32388 | 8.240797 | 453047.5 | 6242387 | A7 | Fjord | St.10 |
| Station 10 | 56.32192 | 8.239672 | 452975.5 | 6242169 | A7 | Fjord | St.11 |
| Station 11 | 56.37173 | 8.132342 | 446407.4 | 6247792 | A8 | Fjord | St.12 |
| Station 12 | 56.37221 | 8.130017 | 446264.5 | 6247847 | A8 | Fjord | St.13 |
| Station 13 | 56.37250 | 8.127761 | 446125.6 | 6247881 | A8 | Fjord | St.14 |
| Station 14 | 56.37199 | 8.118439 | 445549.1 | 6247831 | A9 | Sea | St.15 |
| Station 15 | 56.37256 | 8.118169 | 445533.2 | 6247895 | A9 | Sea | St.16 |
| Station 16 | 56.37200 | 8.117658 | 445500.9 | 6247833 | A9 | Sea | St.17 |
| Receiver | Array | Station.name | Standard.name | Start | Stop |
|---|---|---|---|---|---|
| 132907 | A0 | Station -1 | St.1 | 2018-03-15 12:00:00 | 2018-06-01 12:00:00 |
| 132908 | A1 | Station 1 | St.2 | 2018-03-15 12:00:00 | 2018-06-01 12:00:00 |
| 132909 | A7 | Station 7 | St.8 | 2018-03-15 12:00:00 | 2018-06-01 12:00:00 |
| 132914 | A5 | Station 5 | St.6 | 2018-03-15 12:00:00 | 2018-06-01 12:00:00 |
| 132915 | A6 | Station 6 | St.7 | 2018-03-15 12:00:00 | 2018-06-01 12:00:00 |
| 132916 | A4 | Station 4 | St.5 | 2018-03-15 12:00:00 | 2018-06-01 12:00:00 |
| 132917 | A3 | Station 3 | St.4 | 2018-03-15 12:00:00 | 2018-06-01 12:00:00 |
| 132918 | A2 | Station 2 | St.3 | 2018-03-15 12:00:00 | 2018-06-01 12:00:00 |
| 133205 | A8 | Station 13 | St.14 | 2018-03-15 12:00:00 | 2018-06-01 12:00:00 |
| 133206 | A9 | Station 16 | St.17 | 2018-03-15 12:00:00 | 2018-06-01 12:00:00 |
| 133209 | A8 | Station 12 | St.13 | 2018-03-15 12:00:00 | 2018-06-01 12:00:00 |
| 133210 | A9 | Station 14 | St.15 | 2018-03-15 12:00:00 | 2018-06-01 12:00:00 |
| 133215 | A9 | Station 15 | St.16 | 2018-03-15 12:00:00 | 2018-06-01 12:00:00 |
| 133220 | A8 | Station 11 | St.12 | 2018-03-15 12:00:00 | 2018-06-01 12:00:00 |
| 133221 | A7 | Station 10 | St.11 | 2018-03-15 12:00:00 | 2018-06-01 12:00:00 |
| 133222 | A7 | Station 8 | St.9 | 2018-03-15 12:00:00 | 2018-06-01 12:00:00 |
| 133224 | A7 | Station 9 | St.10 | 2018-03-15 12:00:00 | 2018-06-01 12:00:00 |
| Station.name | Latitude | Longitude | x | y | Array | Type | Standard.name | n.A | n.B |
|---|---|---|---|---|---|---|---|---|---|
| RS1 | 56.349 | 8.6204 | 476539 | 6244988 | A1 | Release | RS1 | 30 | 30 |
efficiency object.
advEfficiency(results$efficiency) to obtain beta-drawn efficiency distributions (replace results with the name of the object where you saved the analysis).
Events recorded and missed
| A0 | A1 | A2 | A3 | A4 | A5 | A6 | A7 | A8 | A9 | |
|---|---|---|---|---|---|---|---|---|---|---|
| Recorded events | 0 | 54 | 54 | 52 | 54 | 54 | 52 | 49 | 46 | 37 |
| Known missed events | - | 0 | 0 | 2 | 0 | 0 | 0 | 1 | 0 | - |
| Potentially missed events | - | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | - |
Array efficiency
Note: These values already include any intra-array efficiency estimates that have been requested.
| A0 | A1 | A2 | A3 | A4 | A5 | A6 | A7 | A8 | A9 | |
|---|---|---|---|---|---|---|---|---|---|---|
| Maximum efficiency | - | 100% | 100% | 96.3% | 100% | 100% | 100% | 98% | 100% | - |
| Minimum efficiency | - | 100% | 100% | 96.3% | 100% | 100% | 100% | 98% | 100% | - |
Warning: GUI is set to 'needed' but packages 'gWidgets2', 'gWidgets2RGtk2', 'RGtk2' are not available. Please install them if you intend to run GUI.
Disabling GUI (i.e. GUI = 'never') for the current run.
Warning: No detections were found for receiver(s) 132907.
Warning: 'speed.warning'/'speed.error' were not set, skipping speed checks.
Warning: 'inactive.warning'/'inactive.error' were not set, skipping inactivity checks.
Warning: Section movements with less than 2 detections are present for tag R64K-4503 (28/54).
R64K-4503 This is a lovely fish
last.seen object.
| Disap. in River | Disap. in Fjord | Disap. in Sea | Disap. at Release | |
|---|---|---|---|---|
| A | 0 | 6 | 20 | 4 |
| B | 4 | 9 | 15 | 2 |
plotTimes() function.
array.times object.
section.times$arrival object.
plotTimes() function.
section.times$arrival object.
section.times$departure object.
plotTimes() function.
section.times$departure object.
global.ratios and time.positions objects.
plotRatios() function.
group.ratiosobject.
plotRatios().
time.ratios object (one table per tag). More condensed information can be found in the section.movements object.
plotResidency() function.
detections.y.axis argument.
section.order argument.
plotDetections() function.
plotMoves() function.
detections and movements objects (and respective valid counterparts).
detections.y.axis.
valid.detections object.
plotSensors() function.
Actel R package report.
Version: 1.2.1
Target folder: C:/Git/ETN_workshop_Jan2021/actel_example
Timestamp: 2021-01-25 15:38:14
Function: residency()
M: 'report' option has been activated.
M: Importing data. This process may take a while.
M: Number of target tags: 60.
M: Matching detections with deployment periods.
M: Number of ALS: 17 (of which 1 had no detections)
Warning: No detections were found for receiver(s) 132907.
M: Data time range: 2018-04-13 22:26:37 to 2018-05-25 17:46:13 (Europe/Copenhagen).
M: File 'distances.csv' found, activating speed calculations.
M: Data successfully imported!
M: Creating movement records for the valid tags.
M: Checking movement events quality.
Warning: 'speed.warning'/'speed.error' were not set, skipping speed checks.
Warning: 'inactive.warning'/'inactive.error' were not set, skipping inactivity checks.
M: Compiling and checking section movements for the valid tags.
Warning: Section movements with less than 2 detections are present for tag R64K-4503 (28/54).
M: Filtering valid array movements.
M: Filtering valid section movements.
M: Compiling residency objects.
M: Calculating daily locations for each tag.
M: Calculating inter-array efficiency.
M: Saving results as 'actel_residency_results.RData'.
M: Producing the report.
M: Drawing individual detection graphics.
M: Drawing individual residency graphics.
M: Printing sensor values for tags with sensor data.
M: Process finished successfully.
-------------------
User comments:
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R64K-4503: This is a lovely fish
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User interventions:
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comment # on R64K-4503
This is a lovely fish
n # invalidate/expand moves in R64K-4503?
y # save results?
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Function call:
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residency(tz = 'Europe/Copenhagen', section.order = NULL, datapack = NULL, max.interval = 60, minimum.detections = 2, start.time = NULL, stop.time = NULL, speed.method = c('last to first'), speed.warning = NULL, speed.error = NULL, jump.warning = 2, jump.error = 3, inactive.warning = NULL, exclude.tags = NULL, override = NULL, report = TRUE, auto.open = TRUE, discard.orphans = FALSE, discard.first = NULL, save.detections = FALSE, section.minimum = 2, timestep = 'days', replicates = NULL, inactive.error = NULL, GUI = 'never', save.tables.locally = FALSE, print.releases = TRUE, detections.y.axis = 'auto')
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